Changelog#

Name

PR

Developer

Date

Version

✨ Add celltypist back

125

sunnyosun

2024-05-01

Add SPARQL demonstration

124

Zethson

2024-04-24

♻️ Refactor analysis flow

123

sunnyosun

2024-04-23

♻️ Use notebooks for project-flow

122

sunnyosun

2024-04-23

👷 Use uv

121

sunnyosun

2024-04-22

✏️ Fix query

118

sunnyosun

2024-04-18

♻️ Simplify multimodal

116

falexwolf

2024-04-10

✨ Update multimodal

114

sunnyosun

2024-04-10

⬆️ Update Annotate

113

sunnyosun

2024-03-31

🚚 Move the annotate nb to lamindb

112

sunnyosun

2024-03-28

🚚 Rename Validate to Annotate

111

sunnyosun

2024-03-28

🎨 Use validator for scrna

110

sunnyosun

2024-03-26

✨ Add validator guide here

109

sunnyosun

2024-03-18

💚 Update docs

108

sunnyosun

2024-03-01

Simplify text & add analysis-registries back to CI

107

Zethson

2024-02-17

Remove cell typist mention in analysis-registries

106

Zethson

2024-02-17

Remove warning in enrichr

105

Zethson

2024-02-17

💚 Fix CI

104

sunnyosun

2024-02-06

🔥 Remove setup for public ontologies

103

sunnyosun

2024-02-05

📝 Import bionty instead of lb

101

sunnyosun

2024-01-31

Automate entity notebook generation with nox

100

Zethson

2024-01-24

Entity generation script

98

Zethson

2024-01-18

📝 Fix more bionty renaming

96

sunnyosun

2024-01-12

💚 Fix from_bionty

95

sunnyosun

2024-01-10

Fix typos in scrna5

94

Zethson

2024-01-08

🎨 Not set organism globally

92

sunnyosun

2024-01-08

📝 Show virtual outer join in mapped

93

Koncopd

2024-01-07

♻️ Iterate scrna guide

91

falexwolf

2024-01-03

💚 Fix

90

falexwolf

2024-01-02

🚚 Rename Dataset to Collection

89

falexwolf

2023-12-24

Use public-ontologies text

88

Zethson

2023-12-22

Add single ontology notebooks

87

Zethson

2023-12-22

🚚 Rename File to Artifact

86

falexwolf

2023-12-12

📝 Show virtual inner join in mapped

85

Koncopd

2023-12-05

📝 Added celltypist and pathway analyses

84

sunnyosun

2023-12-04

✨ Enabled ID conversion via return_field

83

sunnyosun

2023-12-02

♻️ Simplify scrna5

82

falexwolf

2023-11-20

📝 Show an example of ln.Dataset.indexed usage

81

Koncopd

2023-11-20

📝 Refactor project-flow

80

sunnyosun

2023-11-15

📝 Simplify scrna guide

79

falexwolf

2023-11-07

♻️ Refactored analysis-flow

78

sunnyosun

2023-10-27

💄 Polish

77

falexwolf

2023-10-23

💚 Try to fix CI

76

falexwolf

2023-10-16

📝 Use scvi in the scrna notebook

75

Koncopd

2023-10-10

🍱 Saved scrna notebooks to lamindata

74

sunnyosun

2023-10-04

💄 Polish facs

73

falexwolf

2023-10-02

📝 Polish scrna guide

72

falexwolf

2023-10-02

📝 Add VAE notebook for scrnaseq

71

Koncopd

2023-10-02

♻️ Refactor scRNA guide

70

falexwolf

2023-09-29

📝 Build up versioned FACS dataset incrementally

69

falexwolf

2023-09-27

📝 Shard dataset in FACS

68

falexwolf

2023-09-26

📝 Slightly polish FACS

67

falexwolf

2023-09-23

📝 Break out FACS into 3 notebooks

66

falexwolf

2023-09-22

Add notebook badges

64

Zethson

2023-09-06

📝 Improve FACS example

63

sunnyosun

2023-09-06

📝 Simplify CellTypist

62

falexwolf

2023-09-05

Add binder env

46

Zethson

2023-09-04

♻️ Upgrade to latest lamindb

61

falexwolf

2023-08-31

📝 Rename flow to facs, removed modality assignment

60

sunnyosun

2023-08-31

📝 Polish flow & scrna

59

falexwolf

2023-08-31

📝 Cleaned cell type and pathway notebooks

57

sunnyosun

2023-08-30

🚚 Rename data lineage to data flow

56

falexwolf

2023-08-29

♻️ Refactor project flow

55

falexwolf

2023-08-29

🚚 Rename data lineage to data flow

54

falexwolf

2023-08-29

multimodal review

52

Zethson

2023-08-28

📝 Further improve scrna

53

sunnyosun

2023-08-28

Integrate scRNA-seq review

51

Zethson

2023-08-28

Bulk review

50

Zethson

2023-08-28

Address flow cytomery review

49

Zethson

2023-08-28

🔥 Removed mouse dataset from scrna use cases

48

sunnyosun

2023-08-28

Address LH birds eye review

47

Zethson

2023-08-27

📝 Enable default_field for inspect and validate

36

sunnyosun

2023-08-22

📝 Updated data type notebooks

35

sunnyosun

2023-08-18

📝 Re-structure scrna with 3 step process

34

sunnyosun

2023-08-17

📝 Improve readme

33

falexwolf

2023-08-17

♻️ Refactor birds-eye

32

falexwolf

2023-08-16

♻️ Refactor CI

31

falexwolf

2023-08-12

🍱 Add data-lineage use cases

30

falexwolf

2023-08-11

🚚 Move notebooks to root level for prettier persistent URLs

29

falexwolf

2023-08-10

🚚 Rename folders according to consistent scheme

28

falexwolf

2023-08-10

📝 Fix index

27

sunnyosun

2023-08-09

Update

26

sunnyosun

2023-08-08

♻️ Polish data type guides

25

sunnyosun

2023-08-07

📝 Save to validate

24

falexwolf

2023-08-06

🍱 Add bulk RNA notebook

23

falexwolf

2023-08-06

🚚 Move add_labels from FeatureManager to Data

22

falexwolf

2023-08-06

♻️ Refactor multimodal and spatial

21

falexwolf

2023-08-05

♻️ Also refactor cellmarker guide to pre-storage curation

20

falexwolf

2023-08-05

🎨 Store validated data in scrna example

19

falexwolf

2023-08-05

🚚 Move biology notebooks from lamindb here

18

sunnyosun

2023-08-05

📝 Updated index

17

sunnyosun

2023-08-04

📝 Updated all use cases with new API

16

sunnyosun

2023-08-03

🚚 Rename repository to lamin-usecases

15

falexwolf

2023-07-20

⬆️ Removed top_hit param

14

sunnyosun

2023-07-20

⬆️ Remove sklearn pinning

13

sunnyosun

2023-07-11

📝 Improve celltypist

12

falexwolf

2023-07-04

📝 Updated Celltypist example with parents tracking

10

sunnyosun

2023-07-03

👷 Send Slack notif

11

falexwolf

2023-06-30

📝 Try to fix build

9

falexwolf

2023-06-20

Overhaul pathways and lineage

8

Zethson

2023-06-14

✨ Added a lineage tracking example

6

sunnyosun

2023-06-05

🎨 Adapted to the django based APIs

5

sunnyosun

2023-06-05

Improve text of cell typist use-case

2

Zethson

2023-06-02

📝 Added notebook tracking to enrichr example

4

sunnyosun

2023-06-02

✨ Added a pathway use case

3

sunnyosun

2023-06-02

✨ Add a Celltypist use case

1

sunnyosun

2023-05-29